Package index
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AddFeatures() - Add nodes or edges to a sfnetwork
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AdjacencyMatrix() - Make an adjacency matrix from an sf object
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AssembleReddData() - Combines survey tracks, counts, and a network into a data frame
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AssignReaches() - Divide a network into reaches
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AttachData() - Attach Data to a network
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CheckNetwork() - Check a network and correct common problems
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ConstructStreamVAST() - ConstructStreamVAST This function constructs objects with class "StreamVAST". Depending on the arguments supplied, it will either initialize the object from countdata and reachdata, or it will add details to an already defined StreamVAST object.
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CropArea() - Crop an sf shape - A graphical wrapper for the st_crop function
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Dharmaplot() - Plot the dHARMa scaled residuals, accounts for dummy data
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EditFeatures() - Edit a shape or network in real time
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ExtractBasin() - Extracts a basin or subbasin
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FindRoots() - FindRoots
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FixLoops() - Guides the user in how to fix loops
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Jeremy_sample_variable() - Title
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LocateFeature() - Locate a feature on a shape or network
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LocateRoot() - Locate the root of a network
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MakeEscapement() - Make a table of escapement values based on the AUC method
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MakeReddSurvival() - Convert redd data into survival data set
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Makesfnetwork() - Make a sf network
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MakeSurveyTracks() - Makes sf LINESTRINGs representing survey transects
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plotEscapement() - Make a plot of yearly escapement values
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plotPredictionMap() - Maps, the desired data, with options for facetting
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plotStream() - Makes a line plot that shows tributaries by stream distance
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plotSurvivalCurves() - Plot survival curves from a INLA survival model
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plotSurvivalHistogram() - Plot a histogram of survival estimates across years and reaches
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PointSetup() - Point Setup and checking
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PruneNetwork() - Prunes a network based on various criteria
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RiverMeasureLL() - Converts river measures and Lon/Lat coordinates
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RootNetwork() - Adds or changes the root of a network
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SetTemporalFrame() - This function takes a streamvast object defines a temporal sampling frame and formats everything for use with vast
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SimplifyNetwork() - Simplifies a sfnetwork
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SurvivalTable() - Summarize the results of a survival model in tabular form
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VASTpreds() - Get density predictions from a VAST model